裸甲藻科（学名：Gymnodiniaceae）为裸甲藻目的一个科。
下级分类
本科包括以下属：
- Nusuttodinium latum (Lebour) Takano et Horiguchi, 2014，模式种
- Nusuttodinium poecilochroum
|拟裸甲藻属 |Paragymnodinium |Kang, Jeong, Moestrup & Shin, 2010
||Pavillardia |Kofoid & Swezy, 1920
||Pelagodinium |Siano, Montresor, Probert & de Vargas, 2010
- Pelagodinium béii (Spero) Siano, Montresor, Probert et de Vargas, 2010，模式种
||Pellucidodinium |Onuma & Horiguchi, 2015
- Pellucidodinium psammophilum Onuma & Horiguchi, 2015
||Plectodinium |Biecheler, 1934
||Pseliodinium |Sournia, 1972
||Schillingia |J.Schiller, 1932
||Schizochytriodimum |Elbrächter, 1988
||Sclerodinium |Dodge, 1981
||Spiniferodinium |Horiguchi & Chihara, 1987
- Spiniferodinium galeiforme T.Horiguchi & M.Chihara, 1987
- Spiniferodinium glaeiforme Horiguchi & Chihara, 1987
- Spiniferodinium palauense
||Spirodinium |Schütt, 1896
- Spiniferodinium palauense
||Testudodinium |Horiguchi, Tamura, Katsumata & A.Yamaguchi, 2012
- Testudodinium maedaense Katsumata et Horiguchi, 2012
- Testudodinium magnum Pinto, Terada et Horiguchi, 2016
- Testudodinium testudo (Herdman) Horiguchi, Tamura, Katsumata et A. Yamaguchi 2012，模式种
||Togula |Flo Jorgensen, Murray & Daugbjerg, 2004
||Torodinium |Kofoid & Swezy, 1921
|王氏藻属 |Wangodinium |Z.Luo, Zhangxi Hu, Yingzhong Tang & H.F.Gu, 2018
- 中华王氏藻 Wangodinium sinense Z.Luo, Zhangxi Hu, Yingzhong Tang et H.F.Gu 2018
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